Survival-associated eQTLs across different cancer types
We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
|
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
|---|---|---|---|---|---|---|---|---|---|
| BLCA | rs509303 | chr11:65093190 | A/C | 0 | 216 | 2.73 | 12.37 | 8.87 | KM Plot |
| BLCA | rs542142 | chr11:65087889 | C/T | 3.12E-14 | 215 | 9.05 | 12.68 | 2.17 | KM Plot |
| BLCA | rs55641412 | chr8:50781393 | A/C | 0 | 214 | 10.6 | 8.72 | 0.98 | KM Plot |
| BLCA | rs55833721 | chr4:170639450 | T/C | 1.91E-8 | 212 | 9.05 | 11.47 | 0.57 | KM Plot |
| BLCA | rs55920504 | chr8:50781177 | G/A | 0 | 214 | 10.6 | 8.72 | 0.98 | KM Plot |
| BLCA | rs55940735 | chr17:18222339 | C/T | 1.84E-8 | 211 | 9.95 | 7.35 | 2.07 | KM Plot |
| BLCA | rs55943660 | chr15:40998302 | TA/T | 2.15E-6 | 214 | 10.68 | 7.43 | 5.43 | KM Plot |
| BLCA | rs56007068 | chr8:50781392 | C/T | 0 | 214 | 10.6 | 8.72 | 0.98 | KM Plot |
| BLCA | rs560097 | chr11:65042530 | A/C | 0 | 215 | 8.87 | 12.4 | 2.73 | KM Plot |
| BLCA | rs56049502 | chr12:75927767 | G/A | 3.0E-13 | 208 | 9.05 | 12.43 | 1.65 | KM Plot |
| BLCA | rs56235796 | chr17:58117024 | A/G | 1.34E-5 | 213 | 8.78 | 13 | 5.98 | KM Plot |
| BLCA | rs56390361 | chr1:207985401 | A/G | 0 | 213 | 9.27 | 9.95 | 2.07 | KM Plot |
| BLCA | rs57140606 | chr15:40966187 | C/A | 3.65E-6 | 214 | 10.7 | 6.77 | 6.13 | KM Plot |
| BLCA | rs57165932 | chr8:50740280 | C/T | 0 | 212 | 10.67 | 8.08 | 0.1 | KM Plot |
| BLCA | rs57476545 | chr17:18187564 | G/A | 2.83E-8 | 210 | 9.8 | 8.18 | 2.07 | KM Plot |